Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4168716_4169335_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4168716 - 4169335

Intron Length:

620

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGCAA

5'SS Class:

strong_major

3'SS Sequence:

ATTTATTCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

GACTTCTCAACA

Flanking Amino Acid:

PGEPGDPGPMGPVGSRGPEG

Intron Amino Acid Position:

203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

67.6

39.2

Major BPS

88.7

0.96

0.8

36.5

Major PPT

76.2

0.59

0.8

74.6

35.3

Minor 5ss

30.2

-2.3

3.2

35.2

42.4

Minor BPS

60.3

0.32

1.6

65.37

40.8

Associated Gene:

Gene:

COL5A2

Ensembl Gene ID:

ENSAPLG00000007858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008658

4107852 - 4211173

103322