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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4169390_4170871_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4169390 - 4170871
Intron Length:
1482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATATGT
Flanking Amino Acid:
EGPPGKPGEDGEPGRPGQSG
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
100
1.24
0.5
100
0
Major PPT
88.3
0.86
0.6
89.2
19.7
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
48.8
-0
2.1
74.75
42.1

Associated Gene:

Gene:
COL5A2
Ensembl Gene ID:
ENSAPLG00000007858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008658
4107852 - 4211173
103322