Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4170926_4173844_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4170926 - 4173844

Intron Length:

2919

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGAACA

5'SS Class:

major

3'SS Sequence:

TTTTAATACTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCCTTTTTAATA

Flanking Amino Acid:

SGEPGFPGSPGPRGFPGAPG

Intron Amino Acid Position:

239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.7

0.54

68.4

36.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

72.4

0.5

0.9

71.3

38.5

Minor 5ss

-1.6

2.9

47.7

41.5

Minor BPS

69.1

0.6

1.2

69.67

37.9

Associated Gene:

Gene:

COL5A2

Ensembl Gene ID:

ENSAPLG00000007858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008658

4107852 - 4211173

103322