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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4174674_4175999_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4174674 - 4175999
Intron Length:
1326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCCA
5'SS Class:
major
3'SS Sequence:
TTTCACTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCCCTCTAACT
Flanking Amino Acid:
KGEIGAAGAKGESGPTGAMG
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
66.1
39.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.5
0.71
0.8
73.8
36.5
Minor 5ss
40.7
-1
2.7
51.5
44.8
Minor BPS
64.6
0.54
1.7
82.08
39.3

Associated Gene:

Gene:
COL5A2
Ensembl Gene ID:
ENSAPLG00000007858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008658
4107852 - 4211173
103322