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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4183614_4183718_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4183614 - 4183718
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TTTCTATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTTTACCA
Flanking Amino Acid:
DGSPGAKGPTGSPGTGGPPG
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
73.1
43.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.7
0.8
0.7
81.7
29
Minor 5ss
39.3
-1.2
2.9
56.1
41.4
Minor BPS
77.3
0.85
1.5
86.93
31.8

Associated Gene:

Gene:
COL5A2
Ensembl Gene ID:
ENSAPLG00000007858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008658
4107852 - 4211173
103322