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Intron Name: Anas_platyrhynchos_platyrhynchos_7_4185587_4186240_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4185587 - 4186240

Intron Length:

654

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGCAAT

5'SS Class:

strong_major

3'SS Sequence:

GGCTTTTCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

TAAAAATTAAGG

Flanking Amino Acid:

VGPPGPVGERGAPGNRGFPG

Intron Amino Acid Position:

476

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

77.9

38.6

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

69.5

0.44

0.9

61.7

Minor 5ss

40.6

-1

2.9

49.4

46.6

Minor BPS

43.8

-0.6

2.1

49.02

43.5

Associated Gene:

Gene:

COL5A2

Ensembl Gene ID:

ENSAPLG00000007858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008658

4107852 - 4211173

103322