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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4187122_4187836_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4187122 - 4187836
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCACTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TGCAACCTAACA
Flanking Amino Acid:
PGEPGLPGARGLTGNPGVQG
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
80.8
0.69
0.7
78.5
29
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
49.3
-0
1.9
63.11
42.3

Associated Gene:

Gene:
COL5A2
Ensembl Gene ID:
ENSAPLG00000007858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008658
4107852 - 4211173
103322