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Intron Name: Anas_platyrhynchos_platyrhynchos_7_4187891_4188701_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4187891 - 4188701

Intron Length:

811

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATATTTTTAATC

Flanking Amino Acid:

QGPEGKLGPLGAPGEDGRPG

Intron Amino Acid Position:

545

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

74.1

36.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

89.1

0.88

0.6

85.8

21.3

Minor 5ss

39.8

-1.1

2.9

48.9

41.6

Minor BPS

71.4

0.65

1.1

72.84

31.8

Associated Gene:

Gene:

COL5A2

Ensembl Gene ID:

ENSAPLG00000007858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008658

4107852 - 4211173

103322