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Intron Name: Anas_platyrhynchos_platyrhynchos_7_4188801_4188909_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4188801 - 4188909

Intron Length:

109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTGAGTATT

5'SS Class:

major

3'SS Sequence:

TCCTGCAAATTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TAATTTTTATTC

Flanking Amino Acid:

MGLPGPKGSSGDPGKPGEAG

Intron Amino Acid Position:

578

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

1.1

79.9

34.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

57.8

0.18

56.7

37.8

Minor 5ss

38.2

-1.3

52.2

44.4

Minor BPS

56.5

0.18

1.5

63.53

36.4

Associated Gene:

Gene:

COL5A2

Ensembl Gene ID:

ENSAPLG00000007858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008658

4107852 - 4211173

103322