Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4188964_4189063_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4188964 - 4189063

Intron Length:

100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGAGTGTG

5'SS Class:

major

3'SS Sequence:

AATCTTAATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

GTAATCTTAATT

Flanking Amino Acid:

AGNAGVPGQRGAPGKDGEVG

Intron Amino Acid Position:

596

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

40.1

Major BPS

0.92

0.9

86.2

29.1

Major PPT

0.38

64.5

40.8

Minor 5ss

32.1

-2

3.3

36.6

41.6

Minor BPS

69.7

0.7

1.2

78.21

37.9

Associated Gene:

Gene:

COL5A2

Ensembl Gene ID:

ENSAPLG00000007858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008658

4107852 - 4211173

103322