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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4190669_4191096_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4190669 - 4191096
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAATCATTAATA
Flanking Amino Acid:
PGVVGPLGPRGERGNPGERG
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
47.3
-0.3
2.5
60.3
44.3
Minor BPS
64.7
0.46
1.5
69.64
35.8

Associated Gene:

Gene:
COL5A2
Ensembl Gene ID:
ENSAPLG00000007858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008658
4107852 - 4211173
103322