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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4191196_4191889_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4191196 - 4191889
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
AGGHGPDGPKGSPGPSGTPG
Intron Amino Acid Position:
698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86.3
0.82
0.9
84.8
35.6
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
COL5A2
Ensembl Gene ID:
ENSAPLG00000007858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008658
4107852 - 4211173
103322