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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4195294_4195400_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4195294 - 4195400
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CATTTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTTCACTATCA
Flanking Amino Acid:
QGLAGSPGPPGPSGVPGLKG
Intron Amino Acid Position:
842

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.3
0.61
0.8
74.8
34.4
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
49.2
-0
2.2
70.6
40.9

Associated Gene:

Gene:
COL5A2
Ensembl Gene ID:
ENSAPLG00000007858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008658
4107852 - 4211173
103322