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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4196849_4196949_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4196849 - 4196949
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TTGTGGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATCATTTTATCC
Flanking Amino Acid:
KGDAGEDGQPGPDGPPGPAG
Intron Amino Acid Position:
932

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
68.4
42.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.5
0.55
1
70.4
44.5
Minor 5ss
43.4
-0.7
2.8
60.7
43.6
Minor BPS
51.3
0.02
1.6
60.47
39.2

Associated Gene:

Gene:
COL5A2
Ensembl Gene ID:
ENSAPLG00000007858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008658
4107852 - 4211173
103322