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Intron Name: Anas_platyrhynchos_platyrhynchos_7_4197058_4198047_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4197058 - 4198047

Intron Length:

990

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

CTCATCTATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TATTTCTCATCT

Flanking Amino Acid:

RGMPGLPGPAGTPGKQGPTG

Intron Amino Acid Position:

968

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.9

87.4

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

71.6

0.49

0.9

69.9

35.5

Minor 5ss

37.9

-1.4

2.9

52.2

44.4

Minor BPS

61.3

0.43

1.8

81.26

40.2

Associated Gene:

Gene:

COL5A2

Ensembl Gene ID:

ENSAPLG00000007858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008658

4107852 - 4211173

103322