Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4198156_4198308_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4198156 - 4198308

Intron Length:

153

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTGCAACTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTGAT

U12 Branch Point Sequence:

TGTTTTGCAACT

Flanking Amino Acid:

TGPVGEAGPEGPAGNDGTPG

Intron Amino Acid Position:

1004

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

0.8

88.1

25.2

Major BPS

79.8

0.74

0.9

69.4

37.7

Major PPT

0.45

0.9

60.7

40.4

Minor 5ss

40.3

-1.1

3.4

58.5

40.4

Minor BPS

49.9

0.07

2.2

76.21

40.7

Associated Gene:

Gene:

COL5A2

Ensembl Gene ID:

ENSAPLG00000007858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008658

4107852 - 4211173

103322