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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4198363_4198688_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4198363 - 4198688
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGAATA
5'SS Class:
major
3'SS Sequence:
TTATGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATATTGAAAT
Flanking Amino Acid:
PGRDGAVGERGDRGEPGPAG
Intron Amino Acid Position:
1022

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.7
36.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.8
0.81
0.8
80.8
36.6
Minor 5ss
39
-1.2
3.1
50.4
45.6
Minor BPS
50.7
0.1
1.7
69.85
40.1

Associated Gene:

Gene:
COL5A2
Ensembl Gene ID:
ENSAPLG00000007858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008658
4107852 - 4211173
103322