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Intron Name: Anas_platyrhynchos_platyrhynchos_7_4200423_4201393_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4200423 - 4201393

Intron Length:

971

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTTGT

5'SS Class:

major

3'SS Sequence:

TTCTTCTGTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATGAT

U12 Branch Point Sequence:

AATATCACAACG

Flanking Amino Acid:

TGLQGLPGPPGPIGEQGSPG

Intron Amino Acid Position:

1112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

1.1

72.1

40.1

Major BPS

76.8

0.67

40.9

Major PPT

80.8

0.69

0.8

31.1

Minor 5ss

44.8

-0.6

2.9

68.2

42.5

Minor BPS

46.2

-0.4

1.9

53.26

40.8

Associated Gene:

Gene:

COL5A2

Ensembl Gene ID:

ENSAPLG00000007858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008658

4107852 - 4211173

103322