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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4201448_4202126_F

Intron Information:

Intron Rank:
49
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4201448 - 4202126
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTCTCTTATTT
Flanking Amino Acid:
PGIPGPFGPRGPPGPVGPSG
Intron Amino Acid Position:
1130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.2
30.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.3
0.62
0.9
71.1
39.8
Minor 5ss
33.4
-1.9
2.8
34
41.5
Minor BPS
61.2
0.43
1.6
76.56
40.7

Associated Gene:

Gene:
COL5A2
Ensembl Gene ID:
ENSAPLG00000007858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008658
4107852 - 4211173
103322