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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4205182_4205744_F

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4205182 - 4205744
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAAA
5'SS Class:
strong_major
3'SS Sequence:
CATATCTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTCATATCT
Flanking Amino Acid:
YGLDMNRGSQFVYGDTAVTQ
Intron Amino Acid Position:
1326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.1
83.2
30.8
Major BPS
100
1.24
0.5
100
0
Major PPT
75.1
0.56
0.9
68.3
37
Minor 5ss
40.6
-1.1
2.6
50.9
45.5
Minor BPS
60
0.39
1.9
81.95
39.2

Associated Gene:

Gene:
COL5A2
Ensembl Gene ID:
ENSAPLG00000007858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008658
4107852 - 4211173
103322