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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4205970_4206870_F

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4205970 - 4206870
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
CCCTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
GATTTCTTCTCT
Flanking Amino Acid:
RYTVLHDSCSKRNGNVGKTV
Intron Amino Acid Position:
1401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
35
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
88.4
0.86
0.6
86.9
23.7
Minor 5ss
45
-0.5
2.8
65.4
39.4
Minor BPS
43.2
-0.4
3.6
73.41
43.3

Associated Gene:

Gene:
COL5A2
Ensembl Gene ID:
ENSAPLG00000007858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008658
4107852 - 4211173
103322