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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4220160_4220573_R

Intron Information:

Intron Rank:
49
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4220160 - 4220573
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGCAAA
5'SS Class:
major
3'SS Sequence:
TTACCACCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
AGCCCCTGAACA
Flanking Amino Acid:
LKFCHPDLKSGEYWIDPNQG
Intron Amino Acid Position:
1253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
68.6
37.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
70
0.45
0.8
63.7
32.7
Minor 5ss
44.9
-0.5
2.6
53.5
45.8
Minor BPS
60.8
0.33
1.5
65.52
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001050
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027431
4218405 - 4267822
49418
ENSAPLT00000018606
4218405 - 4267165
48761
ENSAPLT00000002527
4218405 - 4267165
48761