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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4225361_4226014_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4225361 - 4226014
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TTTCTCTCAAAC
Flanking Amino Acid:
KGTPGPRGERGAPGDPGPQG
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
33.9
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
73.6
0.53
0.9
70.3
34.1
Minor 5ss
30.1
-2.3
2.5
26.5
36
Minor BPS
60.7
0.31
1.6
73.49
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001050
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027431
4218405 - 4267822
49418
ENSAPLT00000018606
4218405 - 4267165
48761
ENSAPLT00000002527
4218405 - 4267165
48761