Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4230738_4230824_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4230738 - 4230824

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATCAT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTGTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAA

U12 Branch Point Sequence:

TTCTTTGTCACA

Flanking Amino Acid:

IGGPGFPGPKGENGIPGERG

Intron Amino Acid Position:

658

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

80.3

34.3

Major BPS

75.5

0.63

40.9

Major PPT

83.5

0.75

0.8

79.1

32.9

Minor 5ss

35.2

-1.7

3.1

49.5

46.7

Minor BPS

46.9

-0.2

2.3

65.59

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001050

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018606

4218405 - 4267165

48761

ENSAPLT00000002527

4218405 - 4267165

48761

ENSAPLT00000027431

4218405 - 4267822

49418