Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4230870_4231054_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4230870 - 4231054

Intron Length:

185

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCATAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTCTCATAAACA

Flanking Amino Acid:

AGENGKPGEPGPKGEIGGPG

Intron Amino Acid Position:

643

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

32.3

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

70.7

0.47

66.8

37.5

Minor 5ss

43.9

-0.7

2.9

66.1

38.6

Minor BPS

61.9

0.37

76.36

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001050

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018606

4218405 - 4267165

48761

ENSAPLT00000002527

4218405 - 4267165

48761

ENSAPLT00000027431

4218405 - 4267822

49418