Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4232135_4232252_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4232135 - 4232252

Intron Length:

118

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTTTT

5'SS Class:

major

3'SS Sequence:

TGCCTTTGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTCAT

U12 Branch Point Sequence:

CAACTCATAACC

Flanking Amino Acid:

RGPGGPPGTPGPAGKNGDVG

Intron Amino Acid Position:

589

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

1.1

81.2

33.5

Major BPS

78.3

0.7

0.8

77.7

26.1

Major PPT

73.4

0.53

0.9

72.7

37.5

Minor 5ss

-0.1

2.8

77.2

37.5

Minor BPS

50.9

0.01

1.6

58.82

39.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001050

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027431

4218405 - 4267822

49418

ENSAPLT00000018606

4218405 - 4267165

48761

ENSAPLT00000002527

4218405 - 4267165

48761