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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4237318_4237908_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4237318 - 4237908
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGAAGA
5'SS Class:
major
3'SS Sequence:
TTTACTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTCTTTTACT
Flanking Amino Acid:
DGSPGAAGPPGPPGPPGTAG
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
65
40.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.8
0.65
1
83.2
32
Minor 5ss
35.8
-1.6
3
50.5
45.5
Minor BPS
75.8
0.89
1.5
90.35
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001050
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018606
4218405 - 4267165
48761
ENSAPLT00000002527
4218405 - 4267165
48761
ENSAPLT00000027431
4218405 - 4267822
49418