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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4237954_4238637_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4237954 - 4238637
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
GTTTTTTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
GTGCTCTTATCA
Flanking Amino Acid:
RGRPGNPGGPGAHGKDGSPG
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
80.8
0.69
0.7
76.8
32
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
57
0.22
1.6
65.19
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001050
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027431
4218405 - 4267822
49418
ENSAPLT00000018606
4218405 - 4267165
48761
ENSAPLT00000002527
4218405 - 4267165
48761