About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4238692_4238903_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4238692 - 4238903
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAATATG
5'SS Class:
major
3'SS Sequence:
TTATGTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATGTCATAAACT
Flanking Amino Acid:
PGANGSPGQPGPRGPAGERG
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
75.5
40.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80.8
0.69
0.9
73.7
41.5
Minor 5ss
39.2
-1.2
2.9
51.7
44.9
Minor BPS
60.1
0.4
2
79.61
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001050
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018606
4218405 - 4267165
48761
ENSAPLT00000002527
4218405 - 4267165
48761
ENSAPLT00000027431
4218405 - 4267822
49418