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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4238949_4239462_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4238949 - 4239462
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTACATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAACT
Flanking Amino Acid:
KGDSGAPGPKGETGLPGANG
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
66.3
0.37
1
59.7
39.6
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
82.1
1.09
1
91
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001050
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027431
4218405 - 4267822
49418
ENSAPLT00000018606
4218405 - 4267165
48761
ENSAPLT00000002527
4218405 - 4267165
48761