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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4239517_4241040_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4239517 - 4241040
Intron Length:
1524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TATTCACAGATA
Flanking Amino Acid:
PGMPGMKGSRGFDGKDGAKG
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
84.6
33.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
80.8
0.69
0.7
75.8
26.4
Minor 5ss
42.9
-0.8
2.9
57
41.2
Minor BPS
44.3
-0.4
2.1
61.16
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001050
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018606
4218405 - 4267165
48761
ENSAPLT00000002527
4218405 - 4267165
48761
ENSAPLT00000027431
4218405 - 4267822
49418