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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4241095_4241252_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4241095 - 4241252
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
TTTGTGTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATTTACTCATCT
Flanking Amino Acid:
NGDRGIPGLPGHKGHPGMPG
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
69.9
35.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
74.8
0.56
1
73.5
41.9
Minor 5ss
39.4
-1.2
2.9
49.3
46.7
Minor BPS
55.8
0.26
2
80.17
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001050
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018606
4218405 - 4267165
48761
ENSAPLT00000002527
4218405 - 4267165
48761
ENSAPLT00000027431
4218405 - 4267822
49418