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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4242066_4242285_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4242066 - 4242285
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTACGTATA
5'SS Class:
major
3'SS Sequence:
TATTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATATTTAATA
Flanking Amino Acid:
PGEPGQPGPSGPPGPAGMIG
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
71.5
40
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
90.6
0.91
0.7
89.2
27.2
Minor 5ss
41.2
-1
3.1
60.5
44
Minor BPS
70.3
0.63
1.4
77.11
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001050
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027431
4218405 - 4267822
49418
ENSAPLT00000018606
4218405 - 4267165
48761
ENSAPLT00000002527
4218405 - 4267165
48761