Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4248218_4248790_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4248218 - 4248790

Intron Length:

573

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTGCC

5'SS Class:

major

3'SS Sequence:

TGTATCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

ATGTCTGTATCT

Flanking Amino Acid:

PVHQGPRGEPGPPGPPGRSG

Intron Amino Acid Position:

108

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

1.1

67.9

38.9

Major BPS

0.85

0.9

39.9

Major PPT

83.2

0.75

0.9

77.2

36.9

Minor 5ss

36.9

-1.5

3.3

42.2

Minor BPS

49.7

0.05

2.2

73.68

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001050

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018606

4218405 - 4267165

48761

ENSAPLT00000002527

4218405 - 4267165

48761

ENSAPLT00000027431

4218405 - 4267822

49418