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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4251109_4267086_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4251109 - 4267086
Intron Length:
15978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATACTGAACT
Flanking Amino Acid:
QPSVILAQQDVLGGCTHLGQ
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
29.9
Major BPS
80
0.75
1
78.6
31
Major PPT
80.5
0.69
0.7
76.8
25.5
Minor 5ss
32.4
-2
2.8
43.1
43.9
Minor BPS
65.4
0.56
1.6
80.88
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001050
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027431
4218405 - 4267822
49418
ENSAPLT00000018606
4218405 - 4267165
48761
ENSAPLT00000002527
4218405 - 4267165
48761