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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4429542_4436710_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4429542 - 4436710
Intron Length:
7169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAACT
Flanking Amino Acid:
DIQSKLDEMQEGFKMGLTLE
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.9
0.76
0.8
78.2
34.9
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
80.9
1.05
1.4
96.98
27.1

Associated Gene:

Gene:
GULP1
Ensembl Gene ID:
ENSAPLG00000016317
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044224
4429470 - 4502462
72993
ENSAPLT00000023621
4429470 - 4502462
72993
ENSAPLT00000017025
4429470 - 4502462
72993