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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4443503_4455109_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4443503 - 4455109
Intron Length:
11607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
GTCCTTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTGCCCTAATA
Flanking Amino Acid:
LRITQVHASPAGSVTPKSPS
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.1
0.56
0.9
69.9
35.2
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
62.6
0.39
1.8
74.47
37.3

Associated Gene:

Gene:
GULP1
Ensembl Gene ID:
ENSAPLG00000016317
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017025
4429470 - 4502462
72993