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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4446536_4455597_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4446536 - 4455597
Intron Length:
9062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
GATTCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CTTTCTGTGATT
Flanking Amino Acid:
RKQIAGLQKRLLHIKCDNDE
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.6
33.2
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
81.2
0.7
0.9
77.5
36.4
Minor 5ss
47.4
-0.3
2.8
63.8
41.6
Minor BPS
56.6
0.29
2
78.01
39.5

Associated Gene:

Gene:
GULP1
Ensembl Gene ID:
ENSAPLG00000016317
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023621
4429470 - 4502462
72993