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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4457473_4460067_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4457473 - 4460067
Intron Length:
2595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTATTTTTACTT
Flanking Amino Acid:
GVKILDPKTKEVQHNCQLHR
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90.7
0.92
0.7
85.8
27.5
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
64.3
0.53
1.5
79.64
37.1

Associated Gene:

Gene:
GULP1
Ensembl Gene ID:
ENSAPLG00000016317
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044224
4429470 - 4502462
72993
ENSAPLT00000023621
4429470 - 4502462
72993
ENSAPLT00000017025
4429470 - 4502462
72993