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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4460167_4467826_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4460167 - 4467826
Intron Length:
7660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTGCTGTAATG
Flanking Amino Acid:
VVRDAVRKLKFARHIKKSEG
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.1
0.86
0.6
84.7
22.9
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
49.5
-0.1
2.1
60.82
42.1

Associated Gene:

Gene:
GULP1
Ensembl Gene ID:
ENSAPLG00000016317
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044224
4429470 - 4502462
72993
ENSAPLT00000023621
4429470 - 4502462
72993
ENSAPLT00000017025
4429470 - 4502462
72993