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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4467899_4491124_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4467899 - 4491124
Intron Length:
23226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GCACTGTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTCTCACAATT
Flanking Amino Acid:
SKHYIPYNAKFLGSTEVEQP
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
72.9
0.52
1
68.7
41.8
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
54.4
0.22
1.8
78.58
37.5

Associated Gene:

Gene:
GULP1
Ensembl Gene ID:
ENSAPLG00000016317
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044224
4429470 - 4502462
72993
ENSAPLT00000023621
4429470 - 4502462
72993
ENSAPLT00000017025
4429470 - 4502462
72993