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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4828068_4834760_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4828068 - 4834760
Intron Length:
6693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTATTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTGTCTCTAACC
Flanking Amino Acid:
KEHKQFPRFFEPPAIPSLCM
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
75.4
0.57
0.9
67.2
43.4
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
69.1
0.58
1.7
78.9
36.6

Associated Gene:

Gene:
TFPI
Ensembl Gene ID:
ENSAPLG00000003445
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003520
4808622 - 4835422
26801