About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4834944_4835309_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4834944 - 4835309
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTACCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
AGCATCTTAACT
Flanking Amino Acid:
RKSCLRICKKGFIKNKGGRR
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
34.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
82.7
0.73
0.8
79.3
33.7
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
68.3
0.65
1.3
75.62
40.8

Associated Gene:

Gene:
TFPI
Ensembl Gene ID:
ENSAPLG00000003445
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003520
4808622 - 4835422
26801