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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4878585_4879533_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4878585 - 4879533
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTCTTTCCAACT
Flanking Amino Acid:
PDYFQDFNPSEKVTKICDPS
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
68.4
0.41
1
61.9
39.9
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
53
0.17
1.9
76.16
40.8

Associated Gene:

Gene:
CALCRL
Ensembl Gene ID:
ENSAPLG00000003509
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003622
4876413 - 4903680
27268