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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4879647_4882511_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4879647 - 4882511
Intron Length:
2865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGTTCTTGTATT
Flanking Amino Acid:
CNIYTHEKVKTALNLYYLAI
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
83.1
0.75
0.9
77.4
35.5
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
56.8
0.3
1.8
77.3
39.6

Associated Gene:

Gene:
CALCRL
Ensembl Gene ID:
ENSAPLG00000003509
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003622
4876413 - 4903680
27268