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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4888415_4889735_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4888415 - 4889735
Intron Length:
1321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
GCTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AATTTATGAATT
Flanking Amino Acid:
NNQELVATNPISCKVSQFIY
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
71.7
33.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
85.7
0.8
0.8
80.7
31.4
Minor 5ss
34.2
-1.8
3.2
45.6
43.6
Minor BPS
55.6
0.25
1.7
73.68
36.7

Associated Gene:

Gene:
CALCRL
Ensembl Gene ID:
ENSAPLG00000003509
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003622
4876413 - 4903680
27268