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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4890973_4891091_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4890973 - 4891091
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ATGTTTTTACTT
Flanking Amino Acid:
AVARTLYYNDNCWISSDTHL
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
87
0.83
0.7
81.2
36.5
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
58.9
0.36
1.6
72.92
39.2

Associated Gene:

Gene:
CALCRL
Ensembl Gene ID:
ENSAPLG00000003509
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003622
4876413 - 4903680
27268