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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4896590_4899927_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4896590 - 4899927
Intron Length:
3338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAGTAA
5'SS Class:
major
3'SS Sequence:
TTTTCTATCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTCTATCACA
Flanking Amino Acid:
ATIFCFFNGEVQAVLRRHWN
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
65.2
37.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
85.5
0.8
0.7
80.8
29.6
Minor 5ss
34
-1.8
3.6
45.7
49.5
Minor BPS
60.9
0.34
2
80.03
36.1

Associated Gene:

Gene:
CALCRL
Ensembl Gene ID:
ENSAPLG00000003509
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003622
4876413 - 4903680
27268