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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_490835_495149_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
490835 - 495149
Intron Length:
4315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAATTTAT
5'SS Class:
major
3'SS Sequence:
CCCGCTTCGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGGGC
U12 Branch Point Sequence:
GCCGCTTGGGCC
Flanking Amino Acid:
SHASQKLRSQNTQGREPEAE
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
79.6
29.1
Major BPS
19.5
-1.9
4
38.2
41.7
Major PPT
64
0.32
1
56.8
38.8
Minor 5ss
43.6
-0.7
2.8
58.5
40.3
Minor BPS
32.9
-1.3
3.3
42.03
39.5

Associated Gene:

Gene:
MAIP1
Ensembl Gene ID:
ENSAPLG00000008514
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038538
484766 - 495385
10620