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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4912231_4913052_R

Intron Information:

Intron Rank:
150196
Intron Class:
major
Intron Phase:
Intron Coordinates:
4912231 - 4913052
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CCATTATTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
89.3
0.88
0.6
88.7
20.6
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
48.9
-0
1.6
54.9
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028386
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017217
4908961 - 4919933
10973